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pymolrc file and his crystallographic software wiki and website, including instructions on how to install precompiled binary packages using fink.

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FreeMOL installation for MPEG movie export.You can also set up an alias in your ~/.profile: If this happens to you, a workaround is to launch PyMOL explicitly in Mono mode with `pymol -M`. UPDATE- New Version is now integrated in the official PyMOL plugin repository -UPDATE- The BNI (Beyond Normal Interaction)- Tools is a plug in for the PyMOL molecular visualization system which adds additional functionalities and presets to the PyMOL GUI and also adds useful extended commands. Some older Macs seem to crash with stereo graphics. The fink pymol package is already preconfigured to do the right thing to use apbs as a plugin. Will install apbs and its required dependencies for you. If you have multiple processors available, you might wish to install the MPI version of APBS. These are also available as Fink packages, and include APBS, maloc and pdb2pqr. To use the electrostatics plugin, you will need APBS and its dependencies.

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That way the OpenGL context will be created with stereo support. Regarding Compilation under Mac OS X Although Mac OS X is a proprietary closed-source operating system, compilation of PyMOL is supported on Mac OS X under the X11/Fink environment, since that setup is directly compatible with what you'd find on Linux or FreeBSD. You can also set up an alias in your /.profile: alias pymol'pymol -M' See Also. If this happens to you, a workaround is to launch PyMOL explicitly in Mono mode with pymol -M. The trick to getting MacPyMOL to work in stereo on the second monitor is to force it to initially open on that display by providing an appropriate "-X #" (and perhaps -Y #) option on launch. The fink pymol package is already preconfigured to do the right thing to use apbs as a plugin.

Launch the unix executable with the -m flag: /Applications/MacPyMOL.app/Contents/MacOS/MacPyMOL -m.

Rename or copy/duplicate /Applications/MacPyMOL.app to /Applications/MacPyMOLX11Hybrid.app or to /Applications/PyMOLX11Hybrid.app.

There are two ways to launch the X11 interface: This GUI has some additional features, like the Plugin menu and the Builder. MacPyMOL can optionally run with the same two-window GUI which PyMOL uses on Windows and Linux. The unix executable resides at /Applications/PyMOL.app/Contents/MacOS/PyMOL X11 Hybrid Uninstallation: Move /Applications/PyMOL.app to Trash (In principle, you could drag it into any Finder window and run it from there, it doesn’t have to live in /Applications). PyMOL is a user-sponsored molecular visualization system on an open-source foundation, maintained and distributed by Schrödinger. Launch the program by selecting PyMOL from All Programs in the Start menu. Answer questions asked or click Next as appropriate to complete the installation. Installation: Drag PyMOL.app on the /Applications shortcut. Download the installer to your hard disk and double-click to launch. The bundle also includes ready-to-use APBS, RigiMOL, an MPEG encoder for movie export, and a small molecule energy minimization engine. Schrödinger provides pre-compiled PyMOL to paying sponsors.